Showing : rlog transformation • reset
0
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12
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11k
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Deseq2 rlog or 'regular' normalization?
Deseq2 rlog transformation data visualization
8.7 years ago sunil.mangalam • 0
6
votes
6
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7.8k
views
DEseq2: Is vst/rlog transformation applied to raw counts or normalised counts?
deseq2 vst rlog transformation
updated 5.4 years ago by ★ 13k • written 5.4 years ago by ▴ 20
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3
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7.4k
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What does DESeq2 rlog() return exactly?
deseq2 rlog rlog transformation
8.2 years ago lanhuong ▴ 20
0
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2
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4.9k
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DESeq2: how to interpret the heatmap clustering samples
deseq2 rlog transformation heatmap scale
7.2 years ago • updated 7.1 years ago lina.faller ▴ 10
2
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2
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4.2k
views
choosing the normalization method (rlog, variance stabilizing transformation)
variancestabilizingtransformation rlog transformation deseq2
updated 6 months ago by • 0 • written 6.4 years ago by ▴ 80
4
votes
7
replies
4.2k
views
DESeq2 for survival analysis
deseq2 survival rlog transformation
6.5 years ago array chip ▴ 420
6
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4
replies
3.7k
views
regularized log transformation- loss of zero values for sparsely expressed genes
deseq2 rlog transformation vst variancestabilizingtransformation rlog
updated 7.8 years ago by 42k • written 7.8 years ago by • 0
2
votes
2
replies
3.1k
views
DESeq2 transformation to use for PCA plot
deseq2 pca rlog transformation variancestabilizingtransformation
8.0 years ago Shobana Sekar ▴ 20
2
votes
4
replies
3.1k
views
DESeq2 - PCAplot differs between rlog and vsd transformation
DESeq2 plotPCA rlog transformation vsd
6.8 years ago Jane Merlevede ▴ 90
0
votes
3
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2.9k
views
Data normalization and transformation using DESeq2
deseq2 normalization rnaseq rlog transformation variancestabilizingtransformation
5.5 years ago chiara.facciotto • 0
0
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15
replies
2.8k
views
rlog not found
rlog rlog transformation
6.1 years ago crowsreign42 • 0
1
vote
2
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1.8k
views
DESEq2 Principal Component Analysis with different genes biotypes (protein coding, miRNAs, lncRNAs, etc)
DESeq2 PCA rlog transformation biotype
6.1 years ago JoannaF ▴ 10
0
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3
replies
1.6k
views
rlog transformation using DESeq2
rlog transformation deseq2
updated 7.6 years ago by 42k • written 7.6 years ago by ▴ 60
1
vote
1
reply
1.5k
views
sample removal after clustering
deseq2 rlog transformation
updated 6.3 years ago by 42k • written 6.3 years ago by • 0
2
votes
3
replies
1.3k
views
Better to use rlog or vst transformation for data quality assessment of differental expression data based on size factors?
DESeq2 quality assesment vst rlog transformation
updated 6.0 years ago by 42k • written 6.0 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Variance estimation with DESeq2 and rLog transformation.
deseq2 rlog transformation
updated 7.8 years ago by ★ 13k • written 7.8 years ago by • 0
0
votes
4
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1.3k
views
rlog fast=TRUE not correct?
deseq2 rlog transformation vst
7.9 years ago ldetorrente ▴ 10
2
votes
2
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1.2k
views
rlog transformation for Time-course data
deseq2 rlog transformation timecourse rnaseq
updated 7.6 years ago by 42k • written 7.6 years ago by • 0
1
vote
1
reply
715
views
deseq2: use blind=T or blind=F when find gene groups?
rlog transformation deseq2
updated 5.4 years ago by 42k • written 5.4 years ago by ▴ 20
1
vote
1
reply
697
views
deseq2 rlog trasformation
deseq2 rlog transformation
updated 7.5 years ago by 42k • written 7.5 years ago by ▴ 40
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After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
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